Welcome to LPATH’s documentation!

LPATH: Linguistics Pathway Analysis of Trajectories with Hierarchical clustering is a user-friendly, Python tool for clustering pathways from molecular dynamics and weighted ensemble simulations.

Contents:

• Getting Started
• Usage
  • Introduction
  • Molecular Dynamics
  • Weighted Ensemble Simulations
  • Example Reassign file
• LPATH API Documentation
  • Shared Parameters
  • Discretization Step
  • Extract Step
  • Match Step
  • Plot Step
  • All LPATH Steps
  • argparser
• Common Errors
  • Discretize
  • Extract
  • Match

Indices and tables

• Index

• Module Index

• Search Page